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1

Predicting Tryptic Cleavage from Proteomics Data Using Decision Tree Ensembles

Fannes, Thomas, Vandermarliere, Elien, Schietgat, Leander, Degroeve, Sven, Martens, Lennart, Ramon, Jan

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 276 KB

english, 2013

2

Structural Investigation of B-Raf Paradox Breaker and Inducer Inhibitors

Arora, Rohit, Di Michele, Michela, Stes, Elisabeth, Vandermarliere, Elien, Martens, Lennart, Gevaert, Kris, Van Heerde, Erika, Linders, Joannes T. M., Brehmer, Dirk, Jacoby, Edgar, Bonnet, Pascal

Journal:

Journal of Medicinal Chemistry

Year:

2015

Language:

english

File:

PDF, 8.59 MB

english, 2015

3

Correction to Structural Investigation of B-Raf Paradox Breaker and Inducer Inhibitors

Arora, Rohit, Di Michele, Michela, Stes, Elisabeth, Vandermarliere, Elien, Martens, Lennart, Gevaert, Kris, Van Heerde, Erika, Linders, Joannes T. M., Brehmer, Dirk, Jacoby, Edgar, Bonnet, Pascal

Journal:

Journal of Medicinal Chemistry

Year:

2016

File:

PDF, 136 KB

2016

4

A double point mutation at residues Ile14 and Val15 of Bcl-2 uncovers a role for the BH4 domain in both protein stability and function

Monaco, Giovanni, La Rovere, Rita, Karamanou, Spyridoula, Welkenhuyzen, Kirsten, Ivanova, Hristina, Vandermarliere, Elien, Di Martile, Marta, Del Bufalo, Donatella, De Smedt, Humbert, Parys, Jan B., E

Journal:

Year:

2018

Language:

english

File:

PDF, 1.13 MB

english, 2018

5

Bcl-2 and IP3 compete for the ligand-binding domain of IP3Rs modulating Ca2+ signaling output

Ivanova, Hristina, Wagner, Larry E., Tanimura, Akihiko, Vandermarliere, Elien, Luyten, Tomas, Welkenhuyzen, Kirsten, Alzayady, Kamil J., Wang, Liwei, Hamada, Kozo, Mikoshiba, Katsuhiko, De Smedt, Humb

Journal:

Cellular and Molecular Life Sciences

Year:

2019

Language:

english

File:

PDF, 4.16 MB

english, 2019

6

Crystallographic and activity-based evidence for thumb flexibility and its relevance in glycoside hydrolase family 11 xylanases

Annick Pollet, Elien Vandermarliere, Jeroen Lammertyn, Sergei V. Strelkov, Jan A. Delcour, Christophe M. Courtin

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2009

Language:

english

File:

PDF, 388 KB

english, 2009

7

Crystal structure of the noncompetitive xylanase inhibitor TLXI, member of the small thaumatin-like protein family

Elien Vandermarliere, Willem Lammens, Jan Schoepe, Sigrid Rombouts, Ellen Fierens, Kurt Gebruers, Guido Volckaert, Anja Rabijns, Jan A. Delcour, Sergei V. Strelkov, Christophe M. Courtin

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2010

Language:

english

File:

PDF, 223 KB

english, 2010

8

Structural analysis of a glycoside hydrolase family 43 arabinoxylan arabinofuranohydrolase in complex with xylotetraose reveals a different binding mechanism compared with other members of the same family

Vandermarliere, Elien, Bourgois, Tine M., Winn, Martyn D., van Campenhout, Steven, Volckaert, Guido, Delcour, Jan A., Strelkov, Sergei V., Rabijns, Anja, Courtin, Christophe M.

Journal:

Biochemical Journal

Year:

2009

Language:

english

File:

PDF, 938 KB

english, 2009

9

Protein structure as a means to triage proposed PTM sites

Vandermarliere, Elien, Martens, Lennart

Journal:

Year:

2013

Language:

english

File:

PDF, 626 KB

english, 2013

10

Crystallographic analysis shows substrate binding at the −3 to +1 active-site subsites and at the surface of glycoside hydrolase family 11 endo-1,4-β-xylanases

Vandermarliere, Elien, Bourgois, Tine M., Rombouts, Sigrid, van Campenhout, Steven, Volckaert, Guido, Strelkov, Sergei V., Delcour, Jan A., Rabijns, Anja, Courtin, Christophe M.

Journal:

Biochemical Journal

Year:

2008

Language:

english

File:

PDF, 582 KB

english, 2008

11

Getting intimate with trypsin, the leading protease in proteomics

Vandermarliere, Elien, Mueller, Michael, Martens, Lennart

Journal:

Mass Spectrometry Reviews

Year:

2013

Language:

english

File:

PDF, 798 KB

english, 2013

12

His22 of TLXI plays a critical role in the inhibition of glycoside hydrolase family 11 xylanases

Rombouts, Sigrid, Fierens, Ellen, Vandermarliere, Elien, Voet, Arnout, Gebruers, Kurt, Beaugrand, Johnny, Courtin, Christophe M., Delcour, Jan A., de Maeyer, Marc, Rabijns, Anja, Van Campenhout, Steve

Journal:

Journal of Enzyme Inhibition and Medicinal Chemistry

Year:

2009

Language:

english

File:

PDF, 2.45 MB

english, 2009

13

Unraveling the specificities of the different human methionine sulfoxide reductases

Vandermarliere, Elien, Ghesquière, Bart, Jonckheere, Veronique, Gevaert, Kris, Martens, Lennart

Journal:

Year:

2014

Language:

english

File:

PDF, 740 KB

english, 2014

14

Scop3D: Three-dimensional visualization of sequence conservation

Vermeire, Tessa, Vermaere, Stijn, Schepens, Bert, Saelens, Xavier, Van Gucht, Steven, Martens, Lennart, Vandermarliere, Elien

Journal:

Year:

2015

Language:

english

File:

PDF, 698 KB

english, 2015

15

PepShell: Visualization of Conformational Proteomics Data

Vandermarliere, Elien, Maddelein, Davy, Hulstaert, Niels, Stes, Elisabeth, Di Michele, Michela, Gevaert, Kris, Jacoby, Edgar, Brehmer, Dirk, Martens, Lennart

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 1.44 MB

english, 2015

16

Resolution of protein structure by mass spectrometry

Vandermarliere, Elien, Stes, Elisabeth, Gevaert, Kris, Martens, Lennart

Journal:

Mass Spectrometry Reviews

Year:

2014

Language:

english

File:

PDF, 1.82 MB

english, 2014

17

Limited Proteolysis Combined with Stable Isotope Labeling Reveals Conformational Changes in Protein (Pseudo)kinases upon Binding Small Molecules

Di Michele, Michela, Stes, Elisabeth, Vandermarliere, Elien, Arora, Rohit, Astorga-Wells, Juan, Vandenbussche, Jonathan, van Heerde, Erika, Zubarev, Roman, Bonnet, Pascal, Linders, Joannes T. M., Jaco

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 5.22 MB

english, 2015

18

A pipeline for differential proteomics in unsequenced species

Yılmaz, Şule, Victor, Bjorn, Hulstaert, Niels, Vandermarliere, Elien, Barsnes, Harald, Degroeve, Sven, Gupta, Surya, Sticker, Adriaan, Gabriël, Sarah, Dorny, Pierre, Palmblad, Magnus, Martens, Lennart

Journal:

Journal of Proteome Research

Year:

2016

Language:

english

File:

PDF, 933 KB

english, 2016

19

The Lyssavirus glycoprotein: A key to cross-immunity

Buthelezi, Sindisiwe G., Dirr, Heini W., Chakauya, Ereck, Chikwamba, Rachel, Martens, Lennart, Tsekoa, Tsepo L., Stoychev, Stoyan H., Vandermarliere, Elien

Journal:

Year:

2016

Language:

english

File:

PDF, 1.01 MB

english, 2016

20

Xilmass: a new approach towards the identification of cross-linked peptides

Yılmaz, Şule, Drepper, Friedel, Hulstaert, Niels, Cernic, Masa, Gevaert, Kris, Economou, Anastassios, Warscheid, Bettina, Martens, Lennart, Vandermarliere, Elien

Journal:

Analytical Chemistry

Year:

2016

Language:

english

File:

PDF, 1.48 MB

english, 2016

21

Ryanodine receptors are targeted by anti-apoptotic Bcl-XL involving its BH4 domain and Lys87 from its BH3 domain

Vervliet, Tim, Lemmens, Irma, Vandermarliere, Elien, Decrock, Elke, Ivanova, Hristina, Monaco, Giovanni, Sorrentino, Vincenzo, Kasri, Nael Nadif, Missiaen, Ludwig, Martens, Lennart, De Smedt, Humbert,

Journal:

Scientific Reports

Year:

2015

Language:

english

File:

PDF, 1.55 MB

english, 2015

22

An extra dimension in protein tagging by quantifying universal proteotypic peptides using targeted proteomics

Vandemoortele, Giel, Staes, An, Gonnelli, Giulia, Samyn, Noortje, De Sutter, Delphine, Vandermarliere, Elien, Timmerman, Evy, Gevaert, Kris, Martens, Lennart, Eyckerman, Sven

Journal:

Scientific Reports

Year:

2016

Language:

english

File:

PDF, 1.39 MB

english, 2016

23

Differences in antigenic sites and other functional regions between genotype A and G mumps virus surface proteins

Gouma, Sigrid, Vermeire, Tessa, Van Gucht, Steven, Martens, Lennart, Hutse, Veronik, Cremer, Jeroen, Rota, Paul A., Leroux-Roels, Geert, Koopmans, Marion, Binnendijk, Rob van, Vandermarliere, Elien

Journal:

Scientific Reports

Year:

2018

Language:

english

File:

PDF, 2.01 MB

english, 2018

24

Scop3D: online visualization of mutation rates on protein structure

Kreft, Lukasz, Turan, Demet, Hulstaert, Niels, Botzki, Alexander, Martens, Lennart, Vandermarliere, Elien

Journal:

Journal of Proteome Research

Year:

2018

Language:

english

File:

PDF, 627 KB

english, 2018

25

The study of degradation mechanisms of glyco-engineered plant produced anti-rabies monoclonal antibodies E559 and 62-71-3

Buthelezi, Sindisiwe G., Dirr, Heini W., Chakauya, Ereck, Chikwamba, Rachel, Martens, Lennart, Tsekoa, Tsepo L., Vandermarliere, Elien, Stoychev, Stoyan H., Kaur, Balveen

Journal:

Year:

2018

Language:

english

File:

PDF, 3.72 MB

english, 2018

26

Publisher Correction: Differences in antigenic sites and other functional regions between genotype A and G mumps virus surface proteins

Gouma, Sigrid, Vermeire, Tessa, Van Gucht, Steven, Martens, Lennart, Hutse, Veronik, Cremer, Jeroen, Rota, Paul A., Leroux-Roels, Geert, Koopmans, Marion, van Binnendijk, Rob, Vandermarliere, Elien

Journal:

Scientific Reports

Year:

2020

Language:

english

File:

PDF, 620 KB

english, 2020

27

COSS: A fast and user-friendly tool for spectral library searching

Shiferaw, Genet Abay, Vandermarliere, Elien, Hulstaert, Niels, Gabriels, Ralf, Martens, Lennart, Volders, Pieter-Jan

Journal:

Journal of Proteome Research

Year:

2020

File:

PDF, 674 KB

2020

28

Scop3P: a comprehensive resource of human phosphosites within their full context

Ramasamy, Pathmanaban, Turan, Demet, Tichshenko, Natalia, Hulstaert, Niels, Vandermarliere, Elien, Vranken, Wim F, Martens, Lennart

Journal:

Journal of Proteome Research

Year:

2020

File:

PDF, 1.52 MB

2020